GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20063300 [ AET1Gv20063300]	1D	13265513	13328057	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20063300.1 AET1Gv20063300.1	High	No	534	OG0024215		Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -25.824 AMFE: -0.607 GC content %: 42.509
Atauschii_AET1Gv20063300.2 AET1Gv20063300.2	High	No	595	OG0024215		Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -26.336 AMFE: -0.615 GC content %: 42.857
Atauschii_AET1Gv20063300.7 AET1Gv20063300.7	Low	No	226	OG0067776		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -36.814 AMFE: -0.527 GC content %: 69.912

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET1Gv20063300.7	SwissProt	2021-04-01	Q0DLB9	3.71e-8

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).