Atauschii AET1Gv20064800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20064800 [ AET1Gv20064800] |
1D | 13512008 | 13524327 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20064800.32 AET1Gv20064800.32 |
High | No | 672 | OG0067778 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -22.307 AMFE: -0.579 GC content %: 38.542 | |
| Atauschii_AET1Gv20064800.36 AET1Gv20064800.36 |
High | No | 1170 | OG0015801 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -26.556 AMFE: -0.595 GC content %: 44.615 | |
| Atauschii_AET1Gv20064800.37 AET1Gv20064800.37 |
High | No | 942 | OG0015801 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.690 AMFE: -0.585 GC content %: 43.949 | |
| Atauschii_AET1Gv20064800.38 AET1Gv20064800.38 |
High | No | 1336 | OG0015801 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -27.088 AMFE: -0.610 GC content %: 44.386 | |
| Atauschii_AET1Gv20064800.47 AET1Gv20064800.47 |
High | No | 1259 | OG0024217 | Get ORF Coding potential... Type: noncoding Potential: -0.452 Folding energies... MFEI: -27.869 AMFE: -0.606 GC content %: 45.989 | |
| Atauschii_AET1Gv20064800.48 AET1Gv20064800.48 |
High | No | 380 | OG0024217 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -23.939 AMFE: -0.517 GC content %: 46.316 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
