Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20094900 [ AET1Gv20094900] |
1D | 23770991 | 24001827 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20094900.15 AET1Gv20094900.15 |
High | No | 641 | OG0067814 | Get ORF Coding potential... Type: noncoding Potential: -0.605 Folding energies... MFEI: -35.694 AMFE: -0.629 GC content %: 56.786 | |
Atauschii_AET1Gv20094900.17 AET1Gv20094900.17 |
Low | No | 1791 | OG0067815 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -25.047 AMFE: -0.682 GC content %: 36.739 | |
Atauschii_AET1Gv20094900.20 AET1Gv20094900.20 |
High | No | 739 | OG0067816 | Get ORF Coding potential... Type: noncoding Potential: -0.675 Folding energies... MFEI: -32.585 AMFE: -0.582 GC content %: 56.022 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20094900.17 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |