Atauschii AET1Gv20103000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20103000 [ AET1Gv20103000] |
1D | 26755036 | 26757453 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20103000.1 AET1Gv20103000.1 |
High | No | 1682 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -29.980 AMFE: -0.652 GC content %: 45.957 | |
| Atauschii_AET1Gv20103000.3 AET1Gv20103000.3 |
High | No | 1549 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -27.241 AMFE: -0.603 GC content %: 45.190 | |
| Atauschii_AET1Gv20103000.4 AET1Gv20103000.4 |
High | No | 1498 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -27.690 AMFE: -0.605 GC content %: 45.794 | |
| Atauschii_AET1Gv20103000.5 AET1Gv20103000.5 |
High | No | 1674 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.237 AMFE: -0.653 GC content %: 46.296 | |
| Atauschii_AET1Gv20103000.6 AET1Gv20103000.6 |
High | No | 2105 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -26.402 AMFE: -0.616 GC content %: 42.850 | |
| Atauschii_AET1Gv20103000.7 AET1Gv20103000.7 |
High | No | 800 | OG0002321 | Get ORF Coding potential... Type: noncoding Potential: -0.845 Folding energies... MFEI: -32.337 AMFE: -0.619 GC content %: 52.250 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
