Atauschii AET1Gv20113500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20113500 [ AET1Gv20113500] |
1D | 31080703 | 31097945 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20113500.1 AET1Gv20113500.1 |
Low | No | 871 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -34.099 AMFE: -0.825 GC content %: 41.332 | |
| Atauschii_AET1Gv20113500.10 AET1Gv20113500.10 |
Low | No | 1307 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -34.606 AMFE: -0.755 GC content %: 45.830 | |
| Atauschii_AET1Gv20113500.11 AET1Gv20113500.11 |
Low | No | 1771 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -27.911 AMFE: -0.725 GC content %: 38.509 | |
| Atauschii_AET1Gv20113500.12 AET1Gv20113500.12 |
Low | No | 2964 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -32.024 AMFE: -0.715 GC content %: 44.804 | |
| Atauschii_AET1Gv20113500.13 AET1Gv20113500.13 |
Low | No | 1296 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -38.781 AMFE: -0.805 GC content %: 48.148 | |
| Atauschii_AET1Gv20113500.14 AET1Gv20113500.14 |
Low | No | 1852 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -37.459 AMFE: -0.743 GC content %: 50.432 | |
| Atauschii_AET1Gv20113500.15 AET1Gv20113500.15 |
Low | No | 2560 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -29.359 AMFE: -0.653 GC content %: 44.961 | |
| Atauschii_AET1Gv20113500.16 AET1Gv20113500.16 |
Low | No | 1042 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -41.449 AMFE: -0.709 GC content %: 58.445 | |
| Atauschii_AET1Gv20113500.17 AET1Gv20113500.17 |
Low | No | 2786 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -28.515 AMFE: -0.639 GC content %: 44.616 | |
| Atauschii_AET1Gv20113500.18 AET1Gv20113500.18 |
Low | No | 722 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -28.490 AMFE: -0.583 GC content %: 48.892 | |
| Atauschii_AET1Gv20113500.2 AET1Gv20113500.2 |
Low | No | 3441 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.224 AMFE: -0.674 GC content %: 41.906 | |
| Atauschii_AET1Gv20113500.3 AET1Gv20113500.3 |
Low | No | 3599 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -30.328 AMFE: -0.694 GC content %: 43.707 | |
| Atauschii_AET1Gv20113500.30 AET1Gv20113500.30 |
High | No | 224 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -29.866 AMFE: -0.643 GC content %: 46.429 | |
| Atauschii_AET1Gv20113500.4 AET1Gv20113500.4 |
Low | No | 2065 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -36.441 AMFE: -0.743 GC content %: 49.056 | |
| Atauschii_AET1Gv20113500.5 AET1Gv20113500.5 |
Low | No | 3272 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -31.623 AMFE: -0.715 GC content %: 44.224 | |
| Atauschii_AET1Gv20113500.6 AET1Gv20113500.6 |
Low | No | 2987 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -31.875 AMFE: -0.707 GC content %: 45.062 | |
| Atauschii_AET1Gv20113500.7 AET1Gv20113500.7 |
Low | No | 3146 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -31.688 AMFE: -0.702 GC content %: 45.168 | |
| Atauschii_AET1Gv20113500.8 AET1Gv20113500.8 |
Low | No | 3217 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -31.772 AMFE: -0.702 GC content %: 45.260 | |
| Atauschii_AET1Gv20113500.9 AET1Gv20113500.9 |
Low | No | 3228 | OG0000551 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -32.060 AMFE: -0.719 GC content %: 44.610 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20113500.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET1Gv20113500.18 | SwissProt | 2021-04-01 | Q69X58 | 9.77e-9 |
| Atauschii_AET1Gv20113500.12 | SwissProt | 2021-04-01 | W8JMV1 | 2.32e-5 |
| Atauschii_AET1Gv20113500.11 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET1Gv20113500.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET1Gv20113500.7 | SwissProt | 2021-04-01 | W8JMV1 | 2.48e-5 |
| Atauschii_AET1Gv20113500.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA | |
| Atauschii_AET1Gv20113500.2 | SwissProt | 2021-04-01 | W8JMV1 | 2.72e-5 |
| Atauschii_AET1Gv20113500.14 | SwissProt | 2021-04-01 | W8JMV1 | 9.16e-6 |
| Atauschii_AET1Gv20113500.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
