Atauschii AET1Gv20115700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20115700 [ AET1Gv20115700] |
1D | 32410946 | 32415481 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20115700.10 AET1Gv20115700.10 |
High | No | 2465 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -32.410 AMFE: -0.663 GC content %: 48.884 | |
| Atauschii_AET1Gv20115700.11 AET1Gv20115700.11 |
High | No | 1891 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -33.607 AMFE: -0.678 GC content %: 49.551 | |
| Atauschii_AET1Gv20115700.12 AET1Gv20115700.12 |
High | No | 2354 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -32.251 AMFE: -0.656 GC content %: 49.193 | |
| Atauschii_AET1Gv20115700.7 AET1Gv20115700.7 |
High | No | 2701 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.891 Folding energies... MFEI: -32.403 AMFE: -0.667 GC content %: 48.575 | |
| Atauschii_AET1Gv20115700.8 AET1Gv20115700.8 |
High | No | 2454 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -32.649 AMFE: -0.660 GC content %: 49.470 | |
| Atauschii_AET1Gv20115700.9 AET1Gv20115700.9 |
High | No | 939 | OG0004624 | Get ORF Coding potential... Type: noncoding Potential: -0.478 Folding energies... MFEI: -32.439 AMFE: -0.641 GC content %: 50.586 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
