GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20131500 [ AET1Gv20131500]	1D	36832279	36834625	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20131500.1 AET1Gv20131500.1	High	No	1116	OG0067855		Get ORF Coding potential... Type: noncoding Potential: -0.416 Folding energies... MFEI: -25.484 AMFE: -0.609 GC content %: 41.846
Atauschii_AET1Gv20131500.2 AET1Gv20131500.2	High	No	622	OG0067856		Get ORF Coding potential... Type: noncoding Potential: -0.385 Folding energies... MFEI: -27.412 AMFE: -0.494 GC content %: 55.466
Atauschii_AET1Gv20131500.3 AET1Gv20131500.3	High	No	613	OG0067857		Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -27.912 AMFE: -0.547 GC content %: 51.060

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).