Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20135200 [ AET1Gv20135200] |
1D | 38902082 | 38906052 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20135200.1 AET1Gv20135200.1 |
Low | No | 508 | OG0067863 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -25.315 AMFE: -0.637 GC content %: 39.764 | |
Atauschii_AET1Gv20135200.25 AET1Gv20135200.25 |
Low | No | 676 | OG0024228 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -37.796 AMFE: -0.687 GC content %: 55.030 | |
Atauschii_AET1Gv20135200.26 AET1Gv20135200.26 |
Low | Yes | 1390 | OG0024228 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -34.770 AMFE: -0.733 GC content %: 47.410 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20135200.26 | Rfam | 14.6 | MIR1122 | 2.2e-13 |
Atauschii_AET1Gv20135200.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERVL | |
Atauschii_AET1Gv20135200.26 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20135200.25 | SwissProt | 2021-04-01 | Q84MZ4 | 1.53e-13 |
Atauschii_AET1Gv20135200.26 | SwissProt | 2021-04-01 | Q84MZ4 | 2.11e-12 |