Atauschii AET1Gv20142700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20142700 [ AET1Gv20142700] |
1D | 41350318 | 41407770 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20142700.16 AET1Gv20142700.16 |
High | No | 957 | OG0024233 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -32.424 AMFE: -0.648 GC content %: 50.052 | |
| Atauschii_AET1Gv20142700.29 AET1Gv20142700.29 |
Low | No | 1435 | OG0024234 | Get ORF Coding potential... Type: noncoding Potential: -0.544 Folding energies... MFEI: -28.606 AMFE: -0.642 GC content %: 44.530 | |
| Atauschii_AET1Gv20142700.31 AET1Gv20142700.31 |
High | No | 503 | OG0024234 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -28.072 AMFE: -0.598 GC content %: 46.918 | |
| Atauschii_AET1Gv20142700.35 AET1Gv20142700.35 |
Low | No | 736 | OG0015810 | Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -29.878 AMFE: -0.623 GC content %: 47.962 | |
| Atauschii_AET1Gv20142700.36 AET1Gv20142700.36 |
Low | No | 707 | OG0015810 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -30.071 AMFE: -0.622 GC content %: 48.373 | |
| Atauschii_AET1Gv20142700.62 AET1Gv20142700.62 |
High | No | 443 | OG0015810 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -29.278 AMFE: -0.630 GC content %: 46.501 | |
| Atauschii_AET1Gv20142700.9 AET1Gv20142700.9 |
High | No | 995 | OG0024233 | Get ORF Coding potential... Type: noncoding Potential: -1.220 Folding energies... MFEI: -32.523 AMFE: -0.640 GC content %: 50.854 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20142700.29 | SwissProt | 2021-04-01 | Q9LZU4 | 3.31e-11 |
| Atauschii_AET1Gv20142700.35 | SwissProt | 2021-04-01 | Q8S9L6 | 9.16e-5 |
| Atauschii_AET1Gv20142700.36 | SwissProt | 2021-04-01 | Q8S9L6 | 1.48e-4 |
| Atauschii_AET1Gv20142700.29 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
