GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20148500 [ AET1Gv20148500]	1D	43781759	43802626	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20148500.5 AET1Gv20148500.5	High	No	500	OG0015811		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -24.260 AMFE: -0.598 GC content %: 40.600
Atauschii_AET1Gv20148500.8 AET1Gv20148500.8	High	No	570	OG0015811		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -24.526 AMFE: -0.605 GC content %: 40.526
Atauschii_AET1Gv20148500.9 AET1Gv20148500.9	High	No	687	OG0015811		Get ORF Coding potential... Type: noncoding Potential: -0.607 Folding energies... MFEI: -25.793 AMFE: -0.626 GC content %: 41.194

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).