Atauschii AET1Gv20149900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20149900 [ AET1Gv20149900] |
1D | 44128242 | 44214078 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20149900.1 AET1Gv20149900.1 |
High | No | 665 | OG0015812 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -33.368 AMFE: -0.592 GC content %: 56.391 | |
| Atauschii_AET1Gv20149900.10 AET1Gv20149900.10 |
High | No | 493 | OG0024237 | Get ORF Coding potential... Type: noncoding Potential: -1.358 Folding energies... MFEI: -27.262 AMFE: -0.637 GC content %: 42.799 | |
| Atauschii_AET1Gv20149900.11 AET1Gv20149900.11 |
High | No | 667 | OG0006769 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -31.454 AMFE: -0.634 GC content %: 49.625 | |
| Atauschii_AET1Gv20149900.12 AET1Gv20149900.12 |
High | No | 319 | OG0006769 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -32.853 AMFE: -0.651 GC content %: 50.470 | |
| Atauschii_AET1Gv20149900.13 AET1Gv20149900.13 |
High | No | 248 | OG0067889 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -23.831 AMFE: -0.477 GC content %: 50.000 | |
| Atauschii_AET1Gv20149900.2 AET1Gv20149900.2 |
High | No | 993 | OG0015812 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -32.407 AMFE: -0.636 GC content %: 50.957 | |
| Atauschii_AET1Gv20149900.3 AET1Gv20149900.3 |
High | No | 555 | OG0006769 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -33.784 AMFE: -0.633 GC content %: 53.333 | |
| Atauschii_AET1Gv20149900.4 AET1Gv20149900.4 |
High | No | 325 | OG0003649 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -31.169 AMFE: -0.658 GC content %: 47.385 | |
| Atauschii_AET1Gv20149900.5 AET1Gv20149900.5 |
Low | No | 968 | OG0067890 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -30.269 AMFE: -0.580 GC content %: 52.169 | |
| Atauschii_AET1Gv20149900.6 AET1Gv20149900.6 |
High | No | 738 | OG0006769 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -32.669 AMFE: -0.610 GC content %: 53.523 | |
| Atauschii_AET1Gv20149900.8 AET1Gv20149900.8 |
High | No | 376 | OG0006769 | Get ORF Coding potential... Type: noncoding Potential: -1.046 Folding energies... MFEI: -29.309 AMFE: -0.660 GC content %: 44.415 | |
| Atauschii_AET1Gv20149900.9 AET1Gv20149900.9 |
High | No | 787 | OG0024237 | Get ORF Coding potential... Type: noncoding Potential: -0.548 Folding energies... MFEI: -32.618 AMFE: -0.653 GC content %: 49.936 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20149900.5 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
