Atauschii AET1Gv20160500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20160500 [ AET1Gv20160500] |
1D | 49648571 | 49653048 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20160500.1 AET1Gv20160500.1 |
High | No | 589 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -23.362 AMFE: -0.640 GC content %: 36.503 | |
| Atauschii_AET1Gv20160500.2 AET1Gv20160500.2 |
High | No | 2542 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -26.912 AMFE: -0.661 GC content %: 40.716 | |
| Atauschii_AET1Gv20160500.3 AET1Gv20160500.3 |
High | No | 1286 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -25.809 AMFE: -0.580 GC content %: 44.479 | |
| Atauschii_AET1Gv20160500.4 AET1Gv20160500.4 |
High | No | 2185 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -26.233 AMFE: -0.652 GC content %: 40.229 | |
| Atauschii_AET1Gv20160500.5 AET1Gv20160500.5 |
High | No | 1584 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -28.182 AMFE: -0.642 GC content %: 43.876 | |
| Atauschii_AET1Gv20160500.6 AET1Gv20160500.6 |
High | No | 957 | OG0003650 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -25.152 AMFE: -0.560 GC content %: 44.932 | |
| Atauschii_AET1Gv20160500.7 AET1Gv20160500.7 |
High | No | 686 | OG0067905 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -22.157 AMFE: -0.510 GC content %: 43.440 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
