Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20187200 [ AET1Gv20187200] |
1D | 60811535 | 60825371 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20187200.1 AET1Gv20187200.1 |
Low | Yes | 3541 | OG0024247 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -30.138 AMFE: -0.722 GC content %: 41.740 | |
Atauschii_AET1Gv20187200.10 AET1Gv20187200.10 |
High | No | 324 | OG0067941 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -32.130 AMFE: -0.531 GC content %: 60.494 | |
Atauschii_AET1Gv20187200.25 AET1Gv20187200.25 |
High | No | 520 | OG0067942 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -29.365 AMFE: -0.566 GC content %: 51.923 | |
Atauschii_AET1Gv20187200.26 AET1Gv20187200.26 |
High | No | 923 | OG0067943 | Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -26.652 AMFE: -0.552 GC content %: 48.321 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20187200.1 | Rfam | 14.6 | MIR1122 | 1.4e-14 |
Atauschii_AET1Gv20187200.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |