Atauschii AET1Gv20208400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20208400 [ AET1Gv20208400] |
1D | 72382646 | 72388289 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20208400.1 AET1Gv20208400.1 |
High | No | 2784 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -30.162 AMFE: -0.636 GC content %: 47.450 | |
| Atauschii_AET1Gv20208400.10 AET1Gv20208400.10 |
High | No | 2584 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -29.857 AMFE: -0.629 GC content %: 47.485 | |
| Atauschii_AET1Gv20208400.11 AET1Gv20208400.11 |
High | No | 1830 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -31.612 AMFE: -0.628 GC content %: 50.328 | |
| Atauschii_AET1Gv20208400.12 AET1Gv20208400.12 |
High | No | 1425 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -32.400 AMFE: -0.624 GC content %: 51.930 | |
| Atauschii_AET1Gv20208400.13 AET1Gv20208400.13 |
High | No | 825 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -29.903 AMFE: -0.636 GC content %: 47.030 | |
| Atauschii_AET1Gv20208400.14 AET1Gv20208400.14 |
High | No | 2672 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -28.563 AMFE: -0.635 GC content %: 44.948 | |
| Atauschii_AET1Gv20208400.15 AET1Gv20208400.15 |
High | No | 1800 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -29.728 AMFE: -0.630 GC content %: 47.222 | |
| Atauschii_AET1Gv20208400.16 AET1Gv20208400.16 |
High | No | 998 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -30.481 AMFE: -0.632 GC content %: 48.196 | |
| Atauschii_AET1Gv20208400.18 AET1Gv20208400.18 |
High | No | 1700 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -29.453 AMFE: -0.620 GC content %: 47.471 | |
| Atauschii_AET1Gv20208400.19 AET1Gv20208400.19 |
High | No | 1303 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.642 AMFE: -0.625 GC content %: 45.817 | |
| Atauschii_AET1Gv20208400.2 AET1Gv20208400.2 |
High | No | 2944 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -29.531 AMFE: -0.638 GC content %: 46.264 | |
| Atauschii_AET1Gv20208400.20 AET1Gv20208400.20 |
High | No | 1815 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -29.207 AMFE: -0.612 GC content %: 47.713 | |
| Atauschii_AET1Gv20208400.21 AET1Gv20208400.21 |
High | No | 1418 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -28.519 AMFE: -0.616 GC content %: 46.262 | |
| Atauschii_AET1Gv20208400.23 AET1Gv20208400.23 |
High | No | 344 | OG0000978 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -25.785 AMFE: -0.501 GC content %: 51.453 | |
| Atauschii_AET1Gv20208400.3 AET1Gv20208400.3 |
High | No | 3341 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -29.784 AMFE: -0.633 GC content %: 47.052 | |
| Atauschii_AET1Gv20208400.4 AET1Gv20208400.4 |
High | No | 2419 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -29.905 AMFE: -0.631 GC content %: 47.416 | |
| Atauschii_AET1Gv20208400.5 AET1Gv20208400.5 |
High | No | 2137 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -29.546 AMFE: -0.634 GC content %: 46.607 | |
| Atauschii_AET1Gv20208400.6 AET1Gv20208400.6 |
High | No | 1465 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -32.423 AMFE: -0.636 GC content %: 50.990 | |
| Atauschii_AET1Gv20208400.7 AET1Gv20208400.7 |
High | No | 2401 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -31.233 AMFE: -0.628 GC content %: 49.729 | |
| Atauschii_AET1Gv20208400.8 AET1Gv20208400.8 |
High | No | 2596 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -31.456 AMFE: -0.634 GC content %: 49.653 | |
| Atauschii_AET1Gv20208400.9 AET1Gv20208400.9 |
High | No | 2476 | OG0000391 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -28.982 AMFE: -0.640 GC content %: 45.275 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
