GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20210100 [ AET1Gv20210100]	1D	73299102	73302129	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20210100.5 AET1Gv20210100.5	High	No	502	OG0067986		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -27.470 AMFE: -0.666 GC content %: 41.235
Atauschii_AET1Gv20210100.6 AET1Gv20210100.6	High	No	585	OG0024260		Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -22.171 AMFE: -0.621 GC content %: 35.726
Atauschii_AET1Gv20210100.7 AET1Gv20210100.7	High	No	547	OG0024260		Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -26.691 AMFE: -0.591 GC content %: 45.155

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).