GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20231900 [ AET1Gv20231900]	1D	82909266	82915088	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20231900.11 AET1Gv20231900.11	High	No	935	OG0015826		Get ORF Coding potential... Type: noncoding Potential: -0.348 Folding energies... MFEI: -27.390 AMFE: -0.634 GC content %: 43.209
Atauschii_AET1Gv20231900.8 AET1Gv20231900.8	High	No	1021	OG0015826		Get ORF Coding potential... Type: noncoding Potential: -0.381 Folding energies... MFEI: -36.866 AMFE: -0.643 GC content %: 57.297
Atauschii_AET1Gv20231900.9 AET1Gv20231900.9	High	No	1402	OG0015826		Get ORF Coding potential... Type: noncoding Potential: -0.447 Folding energies... MFEI: -29.508 AMFE: -0.623 GC content %: 47.361

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).