Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20237500 [ AET1Gv20237500] |
1D | 85493200 | 85512504 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20237500.5 AET1Gv20237500.5 |
Low | No | 1144 | OG0009711 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -30.358 AMFE: -0.635 GC content %: 47.815 | |
Atauschii_AET1Gv20237500.7 AET1Gv20237500.7 |
Low | No | 911 | OG0009711 | Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -25.917 AMFE: -0.643 GC content %: 40.285 | |
Atauschii_AET1Gv20237500.8 AET1Gv20237500.8 |
Low | No | 620 | OG0009711 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -27.597 AMFE: -0.671 GC content %: 41.129 | |
Atauschii_AET1Gv20237500.9 AET1Gv20237500.9 |
Low | Yes | 1392 | OG0009711 | Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -25.589 AMFE: -0.693 GC content %: 36.925 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20237500.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Copia | |
Atauschii_AET1Gv20237500.7 | SwissProt | 2021-04-01 | Q9LIP2 | 1.77e-7 |
Atauschii_AET1Gv20237500.8 | SwissProt | 2021-04-01 | O24361 | 3.62e-8 |
Atauschii_AET1Gv20237500.9 | Rfam | 14.6 | MIR1122 | 0.0047 |
Atauschii_AET1Gv20237500.5 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
Atauschii_AET1Gv20237500.7 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |