Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20240000 [ AET1Gv20240000] |
1D | 87021873 | 87022895 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20240000.1 AET1Gv20240000.1 |
High | No | 399 | OG0068030 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -24.712 AMFE: -0.653 GC content %: 37.845 | |
Atauschii_AET1Gv20240000.2 AET1Gv20240000.2 |
Low | No | 577 | OG0068031 | Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -23.068 AMFE: -0.625 GC content %: 36.915 | |
Atauschii_AET1Gv20240000.3 AET1Gv20240000.3 |
Low | No | 311 | OG0068032 | Get ORF Coding potential... Type: noncoding Potential: -0.203 Folding energies... MFEI: -21.672 AMFE: -0.571 GC content %: 37.942 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20240000.2 | SwissProt | 2021-04-01 | Q9XIG1 | 8.17e-12 |
Atauschii_AET1Gv20240000.3 | SwissProt | 2021-04-01 | Q9XIG1 | 3.39e-13 |