Atauschii AET1Gv20259100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20259100 [ AET1Gv20259100] |
1D | 100804306 | 100815416 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20259100.1 AET1Gv20259100.1 |
Low | No | 1271 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.360 Folding energies... MFEI: -24.445 AMFE: -0.633 GC content %: 38.631 | |
| Atauschii_AET1Gv20259100.10 AET1Gv20259100.10 |
Low | No | 1347 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.390 Folding energies... MFEI: -24.514 AMFE: -0.594 GC content %: 41.277 | |
| Atauschii_AET1Gv20259100.11 AET1Gv20259100.11 |
Low | No | 1362 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -24.868 AMFE: -0.616 GC content %: 40.382 | |
| Atauschii_AET1Gv20259100.12 AET1Gv20259100.12 |
Low | No | 826 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.382 Folding energies... MFEI: -25.242 AMFE: -0.624 GC content %: 40.436 | |
| Atauschii_AET1Gv20259100.13 AET1Gv20259100.13 |
Low | No | 1524 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.402 Folding energies... MFEI: -24.626 AMFE: -0.605 GC content %: 40.682 | |
| Atauschii_AET1Gv20259100.14 AET1Gv20259100.14 |
Low | No | 1399 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.428 Folding energies... MFEI: -25.340 AMFE: -0.627 GC content %: 40.386 | |
| Atauschii_AET1Gv20259100.15 AET1Gv20259100.15 |
Low | No | 1520 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.401 Folding energies... MFEI: -24.842 AMFE: -0.610 GC content %: 40.724 | |
| Atauschii_AET1Gv20259100.16 AET1Gv20259100.16 |
Low | No | 507 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.375 Folding energies... MFEI: -25.819 AMFE: -0.689 GC content %: 37.475 | |
| Atauschii_AET1Gv20259100.17 AET1Gv20259100.17 |
High | No | 780 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -25.115 AMFE: -0.697 GC content %: 36.026 | |
| Atauschii_AET1Gv20259100.2 AET1Gv20259100.2 |
Low | No | 1325 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.311 Folding energies... MFEI: -31.857 AMFE: -0.687 GC content %: 46.340 | |
| Atauschii_AET1Gv20259100.3 AET1Gv20259100.3 |
Low | No | 960 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -25.771 AMFE: -0.682 GC content %: 37.812 | |
| Atauschii_AET1Gv20259100.4 AET1Gv20259100.4 |
Low | No | 1203 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -26.392 AMFE: -0.657 GC content %: 40.150 | |
| Atauschii_AET1Gv20259100.5 AET1Gv20259100.5 |
Low | No | 1334 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -25.817 AMFE: -0.647 GC content %: 39.880 | |
| Atauschii_AET1Gv20259100.6 AET1Gv20259100.6 |
Low | No | 1498 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -24.192 AMFE: -0.595 GC content %: 40.654 | |
| Atauschii_AET1Gv20259100.7 AET1Gv20259100.7 |
Low | No | 1101 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.335 Folding energies... MFEI: -26.603 AMFE: -0.675 GC content %: 39.419 | |
| Atauschii_AET1Gv20259100.8 AET1Gv20259100.8 |
Low | No | 548 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.560 Folding energies... MFEI: -26.478 AMFE: -0.701 GC content %: 37.774 | |
| Atauschii_AET1Gv20259100.9 AET1Gv20259100.9 |
Low | No | 1226 | OG0000677 | Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -24.918 AMFE: -0.609 GC content %: 40.946 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20259100.16 | SwissProt | 2021-04-01 | Q0JHU7 | 8.83e-12 |
| Atauschii_AET1Gv20259100.11 | SwissProt | 2021-04-01 | Q6K8S7 | 1.16e-13 |
| Atauschii_AET1Gv20259100.13 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Novosib; DNA/Sola | |
| Atauschii_AET1Gv20259100.7 | SwissProt | 2021-04-01 | Q6K8S7 | 9.91e-14 |
| Atauschii_AET1Gv20259100.2 | SwissProt | 2021-04-01 | Q6K8S7 | 1.14e-13 |
| Atauschii_AET1Gv20259100.12 | SwissProt | 2021-04-01 | Q6K8S7 | 1.34e-14 |
| Atauschii_AET1Gv20259100.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Novosib; DNA/Sola | |
| Atauschii_AET1Gv20259100.8 | SwissProt | 2021-04-01 | Q0JHU7 | 8.79e-12 |
| Atauschii_AET1Gv20259100.3 | SwissProt | 2021-04-01 | Q6K8S7 | 7.31e-14 |
| Atauschii_AET1Gv20259100.13 | SwissProt | 2021-04-01 | Q6K8S7 | 3.05e-14 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
