Atauschii AET1Gv20271300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20271300 [ AET1Gv20271300] |
1D | 107767470 | 107771423 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20271300.1 AET1Gv20271300.1 |
Low | No | 3075 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.164 Folding energies... MFEI: -32.289 AMFE: -0.689 GC content %: 46.862 | |
| Atauschii_AET1Gv20271300.11 AET1Gv20271300.11 |
High | No | 372 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -33.038 AMFE: -0.615 GC content %: 53.763 | |
| Atauschii_AET1Gv20271300.12 AET1Gv20271300.12 |
Low | No | 2872 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.057 Folding energies... MFEI: -31.302 AMFE: -0.676 GC content %: 46.309 | |
| Atauschii_AET1Gv20271300.13 AET1Gv20271300.13 |
High | No | 696 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -33.448 AMFE: -0.671 GC content %: 49.856 | |
| Atauschii_AET1Gv20271300.14 AET1Gv20271300.14 |
Low | No | 2597 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.172 Folding energies... MFEI: -31.683 AMFE: -0.696 GC content %: 45.553 | |
| Atauschii_AET1Gv20271300.15 AET1Gv20271300.15 |
Low | No | 2715 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -30.604 AMFE: -0.671 GC content %: 45.635 | |
| Atauschii_AET1Gv20271300.17 AET1Gv20271300.17 |
Low | No | 2863 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.197 Folding energies... MFEI: -30.409 AMFE: -0.686 GC content %: 44.359 | |
| Atauschii_AET1Gv20271300.18 AET1Gv20271300.18 |
Low | No | 1511 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -30.430 AMFE: -0.692 GC content %: 43.944 | |
| Atauschii_AET1Gv20271300.6 AET1Gv20271300.6 |
Low | No | 3887 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.222 Folding energies... MFEI: -31.091 AMFE: -0.695 GC content %: 44.765 | |
| Atauschii_AET1Gv20271300.7 AET1Gv20271300.7 |
Low | No | 3319 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -31.582 AMFE: -0.690 GC content %: 45.797 | |
| Atauschii_AET1Gv20271300.8 AET1Gv20271300.8 |
Low | No | 3031 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.184 Folding energies... MFEI: -31.059 AMFE: -0.675 GC content %: 45.991 | |
| Atauschii_AET1Gv20271300.9 AET1Gv20271300.9 |
Low | No | 3115 | OG0001275 | Get ORF Coding potential... Type: noncoding Potential: -0.204 Folding energies... MFEI: -31.377 AMFE: -0.682 GC content %: 46.003 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20271300.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET1Gv20271300.6 | SwissProt | 2021-04-01 | Q9SY66 | 2.12e-15 |
| Atauschii_AET1Gv20271300.12 | SwissProt | 2021-04-01 | Q9LIE5 | 7.96e-19 |
| Atauschii_AET1Gv20271300.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET1Gv20271300.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET1Gv20271300.7 | SwissProt | 2021-04-01 | Q9SY66 | 1.8e-15 |
| Atauschii_AET1Gv20271300.14 | SwissProt | 2021-04-01 | Q9SY66 | 1.38e-15 |
| Atauschii_AET1Gv20271300.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET1Gv20271300.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/MULE-MuDR | |
| Atauschii_AET1Gv20271300.8 | SwissProt | 2021-04-01 | Q9LIE5 | 1.03e-15 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
