Atauschii AET1Gv20278500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20278500 [ AET1Gv20278500] |
1D | 111942272 | 111946566 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20278500.10 AET1Gv20278500.10 |
High | No | 2679 | OG0006778 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -29.974 AMFE: -0.696 GC content %: 43.076 | |
| Atauschii_AET1Gv20278500.11 AET1Gv20278500.11 |
Low | No | 1222 | OG0068084 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -33.347 AMFE: -0.671 GC content %: 49.673 | |
| Atauschii_AET1Gv20278500.13 AET1Gv20278500.13 |
High | No | 1162 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -33.804 AMFE: -0.674 GC content %: 50.172 | |
| Atauschii_AET1Gv20278500.16 AET1Gv20278500.16 |
High | No | 904 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -31.128 AMFE: -0.697 GC content %: 44.690 | |
| Atauschii_AET1Gv20278500.17 AET1Gv20278500.17 |
High | No | 270 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -26.037 AMFE: -0.611 GC content %: 42.593 | |
| Atauschii_AET1Gv20278500.18 AET1Gv20278500.18 |
High | No | 1230 | OG0001874 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -29.163 AMFE: -0.710 GC content %: 41.057 | |
| Atauschii_AET1Gv20278500.19 AET1Gv20278500.19 |
High | No | 632 | OG0015832 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -27.769 AMFE: -0.683 GC content %: 40.665 | |
| Atauschii_AET1Gv20278500.20 AET1Gv20278500.20 |
Low | No | 776 | OG0015833 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -30.412 AMFE: -0.674 GC content %: 45.103 | |
| Atauschii_AET1Gv20278500.4 AET1Gv20278500.4 |
High | No | 3246 | OG0006778 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -29.982 AMFE: -0.698 GC content %: 42.945 | |
| Atauschii_AET1Gv20278500.5 AET1Gv20278500.5 |
High | No | 3410 | OG0006778 | Get ORF Coding potential... Type: noncoding Potential: -0.947 Folding energies... MFEI: -30.085 AMFE: -0.699 GC content %: 43.021 | |
| Atauschii_AET1Gv20278500.7 AET1Gv20278500.7 |
High | No | 3206 | OG0006778 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -30.427 AMFE: -0.706 GC content %: 43.107 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20278500.11 | SwissProt | 2021-04-01 | Q14442 | 6.61e-6 |
| Atauschii_AET1Gv20278500.20 | SwissProt | 2021-04-01 | Q14442 | 2.62e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
