GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20287700 [ AET1Gv20287700]	1D	116081909	116364121	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20287700.1 AET1Gv20287700.1	High	No	627	OG0009714		Get ORF Coding potential... Type: noncoding Potential: -0.476 Folding energies... MFEI: -38.006 AMFE: -0.639 GC content %: 59.490
Atauschii_AET1Gv20287700.5 AET1Gv20287700.5	High	No	1226	OG0009714		Get ORF Coding potential... Type: noncoding Potential: -0.278 Folding energies... MFEI: -38.980 AMFE: -0.668 GC content %: 58.320
Atauschii_AET1Gv20287700.7 AET1Gv20287700.7	High	No	366	OG0068100		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -38.306 AMFE: -0.637 GC content %: 60.109

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).