Atauschii AET1Gv20289800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20289800 [ AET1Gv20289800] |
1D | 116574407 | 116836889 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20289800.1 AET1Gv20289800.1 |
High | No | 888 | OG0004631 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -37.117 AMFE: -0.640 GC content %: 57.995 | |
| Atauschii_AET1Gv20289800.10 AET1Gv20289800.10 |
High | No | 999 | OG0015836 | Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -37.848 AMFE: -0.675 GC content %: 56.056 | |
| Atauschii_AET1Gv20289800.11 AET1Gv20289800.11 |
High | No | 204 | OG0068108 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -52.304 AMFE: -0.707 GC content %: 74.020 | |
| Atauschii_AET1Gv20289800.2 AET1Gv20289800.2 |
High | No | 965 | OG0004631 | Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -34.746 AMFE: -0.602 GC content %: 57.720 | |
| Atauschii_AET1Gv20289800.4 AET1Gv20289800.4 |
High | No | 505 | OG0004631 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -38.614 AMFE: -0.644 GC content %: 60.000 | |
| Atauschii_AET1Gv20289800.5 AET1Gv20289800.5 |
High | No | 450 | OG0004631 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -29.756 AMFE: -0.525 GC content %: 56.667 | |
| Atauschii_AET1Gv20289800.7 AET1Gv20289800.7 |
High | No | 793 | OG0024279 | Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -37.314 AMFE: -0.668 GC content %: 55.864 | |
| Atauschii_AET1Gv20289800.8 AET1Gv20289800.8 |
High | No | 548 | OG0024279 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -41.058 AMFE: -0.662 GC content %: 62.044 | |
| Atauschii_AET1Gv20289800.9 AET1Gv20289800.9 |
High | No | 210 | OG0068109 | Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -53.857 AMFE: -0.707 GC content %: 76.190 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
