Atauschii AET1Gv20294100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20294100 [ AET1Gv20294100] |
1D | 120551225 | 120553952 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20294100.1 AET1Gv20294100.1 |
Low | No | 2112 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.391 Folding energies... MFEI: -30.540 AMFE: -0.653 GC content %: 46.733 | |
| Atauschii_AET1Gv20294100.10 AET1Gv20294100.10 |
Low | No | 2347 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -30.320 AMFE: -0.663 GC content %: 45.718 | |
| Atauschii_AET1Gv20294100.12 AET1Gv20294100.12 |
Low | No | 2210 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -30.887 AMFE: -0.670 GC content %: 46.109 | |
| Atauschii_AET1Gv20294100.13 AET1Gv20294100.13 |
Low | No | 2209 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -30.729 AMFE: -0.669 GC content %: 45.948 | |
| Atauschii_AET1Gv20294100.15 AET1Gv20294100.15 |
Low | No | 1983 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.286 Folding energies... MFEI: -31.321 AMFE: -0.664 GC content %: 47.151 | |
| Atauschii_AET1Gv20294100.17 AET1Gv20294100.17 |
Low | No | 2267 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -30.459 AMFE: -0.663 GC content %: 45.964 | |
| Atauschii_AET1Gv20294100.18 AET1Gv20294100.18 |
Low | No | 989 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -23.438 AMFE: -0.587 GC content %: 39.939 | |
| Atauschii_AET1Gv20294100.19 AET1Gv20294100.19 |
Low | No | 999 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.160 Folding energies... MFEI: -24.144 AMFE: -0.578 GC content %: 41.742 | |
| Atauschii_AET1Gv20294100.2 AET1Gv20294100.2 |
Low | No | 2132 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.283 Folding energies... MFEI: -30.685 AMFE: -0.664 GC content %: 46.201 | |
| Atauschii_AET1Gv20294100.20 AET1Gv20294100.20 |
Low | No | 933 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.118 Folding energies... MFEI: -25.252 AMFE: -0.570 GC content %: 44.266 | |
| Atauschii_AET1Gv20294100.21 AET1Gv20294100.21 |
Low | No | 975 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.151 Folding energies... MFEI: -25.149 AMFE: -0.582 GC content %: 43.179 | |
| Atauschii_AET1Gv20294100.22 AET1Gv20294100.22 |
Low | No | 1818 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -31.678 AMFE: -0.655 GC content %: 48.350 | |
| Atauschii_AET1Gv20294100.4 AET1Gv20294100.4 |
Low | No | 2203 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.176 Folding energies... MFEI: -27.585 AMFE: -0.643 GC content %: 42.896 | |
| Atauschii_AET1Gv20294100.5 AET1Gv20294100.5 |
Low | No | 2032 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -27.505 AMFE: -0.642 GC content %: 42.815 | |
| Atauschii_AET1Gv20294100.6 AET1Gv20294100.6 |
Low | No | 2099 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.383 Folding energies... MFEI: -30.596 AMFE: -0.658 GC content %: 46.498 | |
| Atauschii_AET1Gv20294100.7 AET1Gv20294100.7 |
Low | No | 2113 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.301 Folding energies... MFEI: -30.781 AMFE: -0.666 GC content %: 46.238 | |
| Atauschii_AET1Gv20294100.8 AET1Gv20294100.8 |
Low | No | 2316 | OG0000678 | Get ORF Coding potential... Type: noncoding Potential: -0.392 Folding energies... MFEI: -30.147 AMFE: -0.657 GC content %: 45.898 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20294100.18 | SwissProt | 2021-04-01 | C0LGH8 | 6.78e-65 |
| Atauschii_AET1Gv20294100.10 | SwissProt | 2021-04-01 | C0LGH8 | 7.46e-6 |
| Atauschii_AET1Gv20294100.18 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20294100.4 | SwissProt | 2021-04-01 | C0LGH8 | 9.46e-13 |
| Atauschii_AET1Gv20294100.19 | SwissProt | 2021-04-01 | C0LGH8 | 3.46e-64 |
| Atauschii_AET1Gv20294100.12 | SwissProt | 2021-04-01 | C0LGH8 | 1.55e-13 |
| Atauschii_AET1Gv20294100.5 | SwissProt | 2021-04-01 | C0LGH8 | 3.75e-52 |
| Atauschii_AET1Gv20294100.2 | SwissProt | 2021-04-01 | C0LGH8 | 1.88e-47 |
| Atauschii_AET1Gv20294100.13 | SwissProt | 2021-04-01 | C0LGH8 | 1.96e-47 |
| Atauschii_AET1Gv20294100.6 | SwissProt | 2021-04-01 | C0LGH8 | 2.02e-50 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
