Atauschii AET1Gv20297600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20297600 [ AET1Gv20297600] |
1D | 124115374 | 124118654 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20297600.1 AET1Gv20297600.1 |
High | No | 1042 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -28.944 AMFE: -0.651 GC content %: 44.434 | |
| Atauschii_AET1Gv20297600.10 AET1Gv20297600.10 |
High | No | 359 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -25.877 AMFE: -0.611 GC content %: 42.340 | |
| Atauschii_AET1Gv20297600.2 AET1Gv20297600.2 |
Low | No | 1028 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -29.475 AMFE: -0.657 GC content %: 44.844 | |
| Atauschii_AET1Gv20297600.3 AET1Gv20297600.3 |
Low | No | 941 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -26.334 AMFE: -0.640 GC content %: 41.126 | |
| Atauschii_AET1Gv20297600.4 AET1Gv20297600.4 |
High | No | 1058 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -26.805 AMFE: -0.656 GC content %: 40.832 | |
| Atauschii_AET1Gv20297600.5 AET1Gv20297600.5 |
High | No | 834 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -28.849 AMFE: -0.659 GC content %: 43.765 | |
| Atauschii_AET1Gv20297600.6 AET1Gv20297600.6 |
High | No | 946 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -24.619 AMFE: -0.628 GC content %: 39.218 | |
| Atauschii_AET1Gv20297600.7 AET1Gv20297600.7 |
High | No | 898 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -28.853 AMFE: -0.651 GC content %: 44.321 | |
| Atauschii_AET1Gv20297600.8 AET1Gv20297600.8 |
High | No | 698 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -30.602 AMFE: -0.653 GC content %: 46.848 | |
| Atauschii_AET1Gv20297600.9 AET1Gv20297600.9 |
High | No | 328 | OG0000033 | Get ORF Coding potential... Type: noncoding Potential: -0.709 Folding energies... MFEI: -29.573 AMFE: -0.660 GC content %: 44.817 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20297600.2 | SwissProt | 2021-04-01 | Q8L9S1 | 3.11e-4 |
| Atauschii_AET1Gv20297600.3 | SwissProt | 2021-04-01 | Q8L9S1 | 2.75e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
