GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20328100 [ AET1Gv20328100]	1D	155903728	155907272	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20328100.5 AET1Gv20328100.5	High	No	1351	OG0003654		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -27.580 AMFE: -0.649 GC content %: 42.487
Atauschii_AET1Gv20328100.7 AET1Gv20328100.7	High	No	976	OG0003654		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -27.510 AMFE: -0.627 GC content %: 43.852
Atauschii_AET1Gv20328100.8 AET1Gv20328100.8	High	No	949	OG0003654		Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -26.291 AMFE: -0.619 GC content %: 42.466

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).