GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20328300 [ AET1Gv20328300]	1D	156278543	156302591	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20328300.10 AET1Gv20328300.10	High	No	646	OG0024287		Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -25.201 AMFE: -0.649 GC content %: 38.854
Atauschii_AET1Gv20328300.2 AET1Gv20328300.2	High	No	403	OG0068178		Get ORF Coding potential... Type: noncoding Potential: -0.378 Folding energies... MFEI: -26.625 AMFE: -0.577 GC content %: 46.154
Atauschii_AET1Gv20328300.8 AET1Gv20328300.8	High	No	1547	OG0024287		Get ORF Coding potential... Type: noncoding Potential: -0.760 Folding energies... MFEI: -26.167 AMFE: -0.663 GC content %: 39.496

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).