Atauschii AET1Gv20329900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20329900 [ AET1Gv20329900] |
1D | 156838225 | 156843561 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20329900.1 AET1Gv20329900.1 |
Low | No | 1358 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -30.007 AMFE: -0.659 GC content %: 45.508 | |
| Atauschii_AET1Gv20329900.22 AET1Gv20329900.22 |
Low | No | 1705 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -0.321 Folding energies... MFEI: -35.273 AMFE: -0.626 GC content %: 56.305 | |
| Atauschii_AET1Gv20329900.26 AET1Gv20329900.26 |
High | No | 529 | OG0068182 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -21.040 AMFE: -0.574 GC content %: 36.673 | |
| Atauschii_AET1Gv20329900.27 AET1Gv20329900.27 |
High | No | 2072 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -29.821 AMFE: -0.647 GC content %: 46.091 | |
| Atauschii_AET1Gv20329900.28 AET1Gv20329900.28 |
Low | No | 2845 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -27.866 AMFE: -0.654 GC content %: 42.636 | |
| Atauschii_AET1Gv20329900.29 AET1Gv20329900.29 |
High | No | 1518 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -30.652 AMFE: -0.636 GC content %: 48.221 | |
| Atauschii_AET1Gv20329900.30 AET1Gv20329900.30 |
High | No | 1646 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -31.835 AMFE: -0.603 GC content %: 52.795 | |
| Atauschii_AET1Gv20329900.31 AET1Gv20329900.31 |
High | No | 1223 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -30.213 AMFE: -0.620 GC content %: 48.733 | |
| Atauschii_AET1Gv20329900.32 AET1Gv20329900.32 |
High | No | 1240 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -31.935 AMFE: -0.646 GC content %: 49.435 | |
| Atauschii_AET1Gv20329900.33 AET1Gv20329900.33 |
Low | No | 1855 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -28.987 AMFE: -0.625 GC content %: 46.361 | |
| Atauschii_AET1Gv20329900.34 AET1Gv20329900.34 |
Low | No | 1964 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -28.941 AMFE: -0.626 GC content %: 46.232 | |
| Atauschii_AET1Gv20329900.35 AET1Gv20329900.35 |
High | No | 998 | OG0001524 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -31.603 AMFE: -0.645 GC content %: 48.998 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20329900.22 | SwissProt | 2021-04-01 | Q94LR4 | 6.78e-11 |
| Atauschii_AET1Gv20329900.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET1Gv20329900.28 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET1Gv20329900.33 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET1Gv20329900.34 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET1Gv20329900.1 | SwissProt | 2021-04-01 | Q94LR4 | 3.39e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
