Atauschii AET1Gv20342700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20342700 [ AET1Gv20342700] |
1D | 179615718 | 179621355 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20342700.1 AET1Gv20342700.1 |
Low | No | 3399 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -30.606 AMFE: -0.687 GC content %: 44.543 | |
| Atauschii_AET1Gv20342700.11 AET1Gv20342700.11 |
High | No | 3306 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -29.970 AMFE: -0.685 GC content %: 43.769 | |
| Atauschii_AET1Gv20342700.21 AET1Gv20342700.21 |
High | No | 1096 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -37.500 AMFE: -0.687 GC content %: 54.562 | |
| Atauschii_AET1Gv20342700.24 AET1Gv20342700.24 |
Low | No | 1173 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -37.741 AMFE: -0.688 GC content %: 54.817 | |
| Atauschii_AET1Gv20342700.25 AET1Gv20342700.25 |
Low | No | 1025 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.630 Folding energies... MFEI: -39.737 AMFE: -0.705 GC content %: 56.390 | |
| Atauschii_AET1Gv20342700.31 AET1Gv20342700.31 |
Low | No | 3182 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -31.015 AMFE: -0.693 GC content %: 44.752 | |
| Atauschii_AET1Gv20342700.35 AET1Gv20342700.35 |
Low | No | 917 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -30.207 AMFE: -0.643 GC content %: 47.001 | |
| Atauschii_AET1Gv20342700.36 AET1Gv20342700.36 |
Low | No | 750 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -33.880 AMFE: -0.653 GC content %: 51.867 | |
| Atauschii_AET1Gv20342700.38 AET1Gv20342700.38 |
Low | No | 1155 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -30.173 AMFE: -0.650 GC content %: 46.407 | |
| Atauschii_AET1Gv20342700.40 AET1Gv20342700.40 |
Low | No | 786 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -27.074 AMFE: -0.615 GC content %: 44.020 | |
| Atauschii_AET1Gv20342700.41 AET1Gv20342700.41 |
Low | No | 3317 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -27.320 AMFE: -0.681 GC content %: 40.127 | |
| Atauschii_AET1Gv20342700.47 AET1Gv20342700.47 |
Low | No | 736 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.464 Folding energies... MFEI: -24.524 AMFE: -0.571 GC content %: 42.935 | |
| Atauschii_AET1Gv20342700.50 AET1Gv20342700.50 |
Low | No | 1053 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -25.052 AMFE: -0.630 GC content %: 39.791 | |
| Atauschii_AET1Gv20342700.57 AET1Gv20342700.57 |
Low | No | 1062 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -24.623 AMFE: -0.665 GC content %: 37.006 | |
| Atauschii_AET1Gv20342700.59 AET1Gv20342700.59 |
Low | No | 1251 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.076 Folding energies... MFEI: -24.860 AMFE: -0.665 GC content %: 37.410 | |
| Atauschii_AET1Gv20342700.6 AET1Gv20342700.6 |
Low | No | 3216 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -31.054 AMFE: -0.692 GC content %: 44.900 | |
| Atauschii_AET1Gv20342700.7 AET1Gv20342700.7 |
Low | No | 3626 | OG0000679 | Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -30.072 AMFE: -0.690 GC content %: 43.602 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20342700.25 | SwissProt | 2021-04-01 | Q6ZLK0 | 2.28e-10 |
| Atauschii_AET1Gv20342700.6 | SwissProt | 2021-04-01 | Q6ZLK0 | 1.81e-9 |
| Atauschii_AET1Gv20342700.41 | SwissProt | 2021-04-01 | Q6ZLK0 | 1.88e-9 |
| Atauschii_AET1Gv20342700.31 | SwissProt | 2021-04-01 | Q6ZLK0 | 1.79e-9 |
| Atauschii_AET1Gv20342700.7 | SwissProt | 2021-04-01 | Q6ZLK0 | 2.11e-9 |
| Atauschii_AET1Gv20342700.47 | SwissProt | 2021-04-01 | Q6IP65 | 2.89e-4 |
| Atauschii_AET1Gv20342700.35 | SwissProt | 2021-04-01 | Q6IP65 | 1.0e-3 |
| Atauschii_AET1Gv20342700.50 | SwissProt | 2021-04-01 | Q6IP65 | 1.0e-3 |
| Atauschii_AET1Gv20342700.36 | SwissProt | 2021-04-01 | Q6ZLK0 | 7.42e-11 |
| Atauschii_AET1Gv20342700.1 | SwissProt | 2021-04-01 | Q6ZLK0 | 1.94e-9 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
