Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20344700 [ AET1Gv20344700] |
1D | 181741996 | 181743523 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20344700.1 AET1Gv20344700.1 |
Low | No | 334 | OG0024291 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -29.970 AMFE: -0.493 GC content %: 60.778 | |
Atauschii_AET1Gv20344700.2 AET1Gv20344700.2 |
Low | No | 331 | OG0024291 | Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -33.625 AMFE: -0.540 GC content %: 62.236 | |
Atauschii_AET1Gv20344700.4 AET1Gv20344700.4 |
Low | No | 784 | OG0068208 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -36.020 AMFE: -0.603 GC content %: 59.694 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20344700.4 | SwissProt | 2021-04-01 | P0C2F6 | 3.67e-4 |
Atauschii_AET1Gv20344700.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Atauschii_AET1Gv20344700.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Atauschii_AET1Gv20344700.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |