Atauschii AET1Gv20348000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20348000 [ AET1Gv20348000] |
1D | 186141513 | 186144890 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20348000.1 AET1Gv20348000.1 |
High | No | 2256 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -29.840 AMFE: -0.690 GC content %: 43.262 | |
| Atauschii_AET1Gv20348000.10 AET1Gv20348000.10 |
High | No | 2536 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -30.339 AMFE: -0.702 GC content %: 43.218 | |
| Atauschii_AET1Gv20348000.11 AET1Gv20348000.11 |
High | No | 2837 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -29.496 AMFE: -0.702 GC content %: 42.016 | |
| Atauschii_AET1Gv20348000.12 AET1Gv20348000.12 |
High | No | 2122 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -31.310 AMFE: -0.703 GC content %: 44.533 | |
| Atauschii_AET1Gv20348000.14 AET1Gv20348000.14 |
High | No | 2213 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -31.270 AMFE: -0.706 GC content %: 44.284 | |
| Atauschii_AET1Gv20348000.17 AET1Gv20348000.17 |
High | No | 2200 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -31.491 AMFE: -0.696 GC content %: 45.227 | |
| Atauschii_AET1Gv20348000.18 AET1Gv20348000.18 |
High | No | 1857 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -31.190 AMFE: -0.690 GC content %: 45.180 | |
| Atauschii_AET1Gv20348000.19 AET1Gv20348000.19 |
High | No | 2053 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -30.882 AMFE: -0.688 GC content %: 44.910 | |
| Atauschii_AET1Gv20348000.2 AET1Gv20348000.2 |
High | No | 1453 | OG0001525 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -33.138 AMFE: -0.676 GC content %: 49.002 | |
| Atauschii_AET1Gv20348000.20 AET1Gv20348000.20 |
High | No | 2449 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -29.657 AMFE: -0.651 GC content %: 45.529 | |
| Atauschii_AET1Gv20348000.21 AET1Gv20348000.21 |
High | No | 2960 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -29.199 AMFE: -0.663 GC content %: 44.054 | |
| Atauschii_AET1Gv20348000.22 AET1Gv20348000.22 |
High | No | 3267 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -28.653 AMFE: -0.667 GC content %: 42.945 | |
| Atauschii_AET1Gv20348000.24 AET1Gv20348000.24 |
High | No | 2312 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -30.476 AMFE: -0.695 GC content %: 43.858 | |
| Atauschii_AET1Gv20348000.25 AET1Gv20348000.25 |
High | No | 2318 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.294 Folding energies... MFEI: -29.215 AMFE: -0.681 GC content %: 42.925 | |
| Atauschii_AET1Gv20348000.26 AET1Gv20348000.26 |
High | No | 1793 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -33.056 AMFE: -0.692 GC content %: 47.797 | |
| Atauschii_AET1Gv20348000.27 AET1Gv20348000.27 |
High | No | 1464 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -28.327 AMFE: -0.688 GC content %: 41.189 | |
| Atauschii_AET1Gv20348000.28 AET1Gv20348000.28 |
High | No | 1900 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -29.489 AMFE: -0.707 GC content %: 41.737 | |
| Atauschii_AET1Gv20348000.29 AET1Gv20348000.29 |
High | No | 1494 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -33.266 AMFE: -0.684 GC content %: 48.661 | |
| Atauschii_AET1Gv20348000.3 AET1Gv20348000.3 |
High | No | 2540 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -29.299 AMFE: -0.697 GC content %: 42.008 | |
| Atauschii_AET1Gv20348000.4 AET1Gv20348000.4 |
High | No | 2646 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -29.830 AMFE: -0.702 GC content %: 42.517 | |
| Atauschii_AET1Gv20348000.5 AET1Gv20348000.5 |
High | No | 2409 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -30.664 AMFE: -0.700 GC content %: 43.794 | |
| Atauschii_AET1Gv20348000.6 AET1Gv20348000.6 |
High | No | 1742 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -31.131 AMFE: -0.674 GC content %: 46.211 | |
| Atauschii_AET1Gv20348000.7 AET1Gv20348000.7 |
High | No | 1900 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -31.616 AMFE: -0.693 GC content %: 45.632 | |
| Atauschii_AET1Gv20348000.8 AET1Gv20348000.8 |
High | No | 1674 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -31.476 AMFE: -0.677 GC content %: 46.476 | |
| Atauschii_AET1Gv20348000.9 AET1Gv20348000.9 |
High | No | 2353 | OG0000291 | Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -30.710 AMFE: -0.690 GC content %: 44.496 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
