Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20348200 [ AET1Gv20348200] |
1D | 186178487 | 186200555 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20348200.15 AET1Gv20348200.15 |
Low | No | 1499 | OG0024292 | Get ORF Coding potential... Type: noncoding Potential: -1.161 Folding energies... MFEI: -30.781 AMFE: -0.683 GC content %: 45.097 | |
Atauschii_AET1Gv20348200.16 AET1Gv20348200.16 |
Low | No | 444 | OG0068214 | Get ORF Coding potential... Type: noncoding Potential: -1.092 Folding energies... MFEI: -32.252 AMFE: -0.645 GC content %: 50.000 | |
Atauschii_AET1Gv20348200.9 AET1Gv20348200.9 |
Low | No | 981 | OG0068215 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -32.508 AMFE: -0.652 GC content %: 49.847 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20348200.15 | SwissProt | 2021-04-01 | Q6PC62 | 1.32e-4 |
Atauschii_AET1Gv20348200.16 | SwissProt | 2021-04-01 | Q6PC62 | 6.26e-10 |
Atauschii_AET1Gv20348200.15 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Atauschii_AET1Gv20348200.9 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |