Atauschii AET1Gv20377100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20377100 [ AET1Gv20377100] |
1D | 206697301 | 206700920 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20377100.10 AET1Gv20377100.10 |
High | No | 615 | OG0009720 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -31.545 AMFE: -0.640 GC content %: 49.268 | |
| Atauschii_AET1Gv20377100.11 AET1Gv20377100.11 |
High | No | 571 | OG0009720 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -27.426 AMFE: -0.655 GC content %: 41.856 | |
| Atauschii_AET1Gv20377100.12 AET1Gv20377100.12 |
High | No | 1156 | OG0000187 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -25.519 AMFE: -0.686 GC content %: 37.197 | |
| Atauschii_AET1Gv20377100.13 AET1Gv20377100.13 |
High | No | 715 | OG0009720 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -27.035 AMFE: -0.671 GC content %: 40.280 | |
| Atauschii_AET1Gv20377100.14 AET1Gv20377100.14 |
High | No | 493 | OG0068262 | Get ORF Coding potential... Type: noncoding Potential: -0.832 Folding energies... MFEI: -25.172 AMFE: -0.630 GC content %: 39.959 | |
| Atauschii_AET1Gv20377100.9 AET1Gv20377100.9 |
High | No | 374 | OG0009720 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -34.278 AMFE: -0.613 GC content %: 55.882 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
