Atauschii AET1Gv20389900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20389900 [ AET1Gv20389900] |
1D | 212630615 | 212647247 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20389900.29 AET1Gv20389900.29 |
High | No | 701 | OG0015852 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.757 AMFE: -0.608 GC content %: 48.930 | |
| Atauschii_AET1Gv20389900.30 AET1Gv20389900.30 |
High | No | 1217 | OG0068288 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -26.689 AMFE: -0.651 GC content %: 41.002 | |
| Atauschii_AET1Gv20389900.31 AET1Gv20389900.31 |
High | No | 970 | OG0015852 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -31.526 AMFE: -0.649 GC content %: 48.557 | |
| Atauschii_AET1Gv20389900.32 AET1Gv20389900.32 |
High | No | 1545 | OG0015852 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -27.683 AMFE: -0.636 GC content %: 43.560 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
