Atauschii AET1Gv20393000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20393000 [ AET1Gv20393000] |
1D | 214056690 | 214072325 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20393000.17 AET1Gv20393000.17 |
Low | No | 4060 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.335 Folding energies... MFEI: -27.810 AMFE: -0.645 GC content %: 43.128 | |
| Atauschii_AET1Gv20393000.18 AET1Gv20393000.18 |
Low | No | 4036 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -27.953 AMFE: -0.648 GC content %: 43.162 | |
| Atauschii_AET1Gv20393000.19 AET1Gv20393000.19 |
Low | No | 4359 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.272 Folding energies... MFEI: -27.444 AMFE: -0.643 GC content %: 42.693 | |
| Atauschii_AET1Gv20393000.20 AET1Gv20393000.20 |
Low | No | 4680 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -28.169 AMFE: -0.662 GC content %: 42.564 | |
| Atauschii_AET1Gv20393000.21 AET1Gv20393000.21 |
Low | No | 4428 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -28.132 AMFE: -0.657 GC content %: 42.818 | |
| Atauschii_AET1Gv20393000.22 AET1Gv20393000.22 |
Low | No | 3969 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -27.989 AMFE: -0.650 GC content %: 43.084 | |
| Atauschii_AET1Gv20393000.23 AET1Gv20393000.23 |
Low | No | 4040 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -27.705 AMFE: -0.646 GC content %: 42.896 | |
| Atauschii_AET1Gv20393000.24 AET1Gv20393000.24 |
Low | No | 4064 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -28.105 AMFE: -0.645 GC content %: 43.553 | |
| Atauschii_AET1Gv20393000.25 AET1Gv20393000.25 |
Low | No | 4202 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -28.125 AMFE: -0.690 GC content %: 40.766 | |
| Atauschii_AET1Gv20393000.26 AET1Gv20393000.26 |
Low | No | 4298 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.315 Folding energies... MFEI: -28.367 AMFE: -0.660 GC content %: 42.973 | |
| Atauschii_AET1Gv20393000.27 AET1Gv20393000.27 |
Low | No | 2835 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -29.926 AMFE: -0.651 GC content %: 45.996 | |
| Atauschii_AET1Gv20393000.28 AET1Gv20393000.28 |
Low | No | 4133 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -28.633 AMFE: -0.657 GC content %: 43.576 | |
| Atauschii_AET1Gv20393000.29 AET1Gv20393000.29 |
Low | No | 4145 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -27.976 AMFE: -0.647 GC content %: 43.233 | |
| Atauschii_AET1Gv20393000.30 AET1Gv20393000.30 |
Low | No | 4105 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.289 Folding energies... MFEI: -28.032 AMFE: -0.646 GC content %: 43.386 | |
| Atauschii_AET1Gv20393000.31 AET1Gv20393000.31 |
Low | No | 3969 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -28.289 AMFE: -0.657 GC content %: 43.084 | |
| Atauschii_AET1Gv20393000.32 AET1Gv20393000.32 |
Low | No | 4143 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.281 AMFE: -0.659 GC content %: 42.916 | |
| Atauschii_AET1Gv20393000.33 AET1Gv20393000.33 |
Low | No | 1935 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -29.581 AMFE: -0.683 GC content %: 43.307 | |
| Atauschii_AET1Gv20393000.34 AET1Gv20393000.34 |
Low | No | 2082 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -28.602 AMFE: -0.672 GC content %: 42.555 | |
| Atauschii_AET1Gv20393000.35 AET1Gv20393000.35 |
Low | No | 1885 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -29.353 AMFE: -0.681 GC content %: 43.077 | |
| Atauschii_AET1Gv20393000.36 AET1Gv20393000.36 |
Low | No | 4341 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -28.047 AMFE: -0.658 GC content %: 42.640 | |
| Atauschii_AET1Gv20393000.37 AET1Gv20393000.37 |
Low | No | 4053 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.174 Folding energies... MFEI: -28.532 AMFE: -0.662 GC content %: 43.079 | |
| Atauschii_AET1Gv20393000.38 AET1Gv20393000.38 |
Low | No | 2917 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -30.137 AMFE: -0.667 GC content %: 45.183 | |
| Atauschii_AET1Gv20393000.39 AET1Gv20393000.39 |
Low | No | 4137 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.504 AMFE: -0.664 GC content %: 42.930 | |
| Atauschii_AET1Gv20393000.40 AET1Gv20393000.40 |
Low | No | 4330 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -28.042 AMFE: -0.656 GC content %: 42.771 | |
| Atauschii_AET1Gv20393000.41 AET1Gv20393000.41 |
Low | No | 4180 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -28.191 AMFE: -0.654 GC content %: 43.134 | |
| Atauschii_AET1Gv20393000.42 AET1Gv20393000.42 |
Low | No | 4261 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -28.529 AMFE: -0.663 GC content %: 43.042 | |
| Atauschii_AET1Gv20393000.43 AET1Gv20393000.43 |
Low | No | 3868 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -28.224 AMFE: -0.654 GC content %: 43.123 | |
| Atauschii_AET1Gv20393000.44 AET1Gv20393000.44 |
Low | No | 3814 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -28.568 AMFE: -0.657 GC content %: 43.498 | |
| Atauschii_AET1Gv20393000.45 AET1Gv20393000.45 |
Low | No | 2899 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -27.572 AMFE: -0.681 GC content %: 40.497 | |
| Atauschii_AET1Gv20393000.46 AET1Gv20393000.46 |
Low | No | 3011 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.256 Folding energies... MFEI: -27.051 AMFE: -0.674 GC content %: 40.153 | |
| Atauschii_AET1Gv20393000.47 AET1Gv20393000.47 |
Low | No | 1804 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -29.795 AMFE: -0.676 GC content %: 44.069 | |
| Atauschii_AET1Gv20393000.48 AET1Gv20393000.48 |
Low | No | 2893 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -26.415 AMFE: -0.667 GC content %: 39.578 | |
| Atauschii_AET1Gv20393000.49 AET1Gv20393000.49 |
Low | No | 3165 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -27.185 AMFE: -0.677 GC content %: 40.126 | |
| Atauschii_AET1Gv20393000.50 AET1Gv20393000.50 |
Low | No | 3933 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -28.149 AMFE: -0.650 GC content %: 43.300 | |
| Atauschii_AET1Gv20393000.51 AET1Gv20393000.51 |
Low | No | 4048 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -28.088 AMFE: -0.650 GC content %: 43.207 | |
| Atauschii_AET1Gv20393000.52 AET1Gv20393000.52 |
Low | No | 3691 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -28.274 AMFE: -0.651 GC content %: 43.430 | |
| Atauschii_AET1Gv20393000.53 AET1Gv20393000.53 |
Low | No | 4168 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -28.488 AMFE: -0.662 GC content %: 43.018 | |
| Atauschii_AET1Gv20393000.54 AET1Gv20393000.54 |
Low | No | 3832 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.288 AMFE: -0.649 GC content %: 43.554 | |
| Atauschii_AET1Gv20393000.55 AET1Gv20393000.55 |
Low | No | 3855 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.283 Folding energies... MFEI: -27.940 AMFE: -0.654 GC content %: 42.750 | |
| Atauschii_AET1Gv20393000.56 AET1Gv20393000.56 |
Low | No | 3847 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.290 Folding energies... MFEI: -28.014 AMFE: -0.654 GC content %: 42.865 | |
| Atauschii_AET1Gv20393000.57 AET1Gv20393000.57 |
Low | No | 3875 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.152 Folding energies... MFEI: -28.173 AMFE: -0.655 GC content %: 42.994 | |
| Atauschii_AET1Gv20393000.58 AET1Gv20393000.58 |
Low | No | 3804 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -27.855 AMFE: -0.652 GC content %: 42.744 | |
| Atauschii_AET1Gv20393000.59 AET1Gv20393000.59 |
Low | No | 2325 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -30.292 AMFE: -0.645 GC content %: 46.968 | |
| Atauschii_AET1Gv20393000.60 AET1Gv20393000.60 |
Low | No | 4046 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -28.020 AMFE: -0.656 GC content %: 42.734 | |
| Atauschii_AET1Gv20393000.61 AET1Gv20393000.61 |
Low | No | 4031 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.279 Folding energies... MFEI: -28.015 AMFE: -0.656 GC content %: 42.719 | |
| Atauschii_AET1Gv20393000.62 AET1Gv20393000.62 |
Low | No | 3592 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.324 Folding energies... MFEI: -27.300 AMFE: -0.643 GC content %: 42.483 | |
| Atauschii_AET1Gv20393000.63 AET1Gv20393000.63 |
High | No | 1708 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -28.987 AMFE: -0.607 GC content %: 47.775 | |
| Atauschii_AET1Gv20393000.64 AET1Gv20393000.64 |
High | No | 1294 | OG0024309 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -26.801 AMFE: -0.658 GC content %: 40.726 | |
| Atauschii_AET1Gv20393000.65 AET1Gv20393000.65 |
High | No | 1284 | OG0024309 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -27.181 AMFE: -0.665 GC content %: 40.888 | |
| Atauschii_AET1Gv20393000.66 AET1Gv20393000.66 |
Low | No | 2624 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -28.403 AMFE: -0.629 GC content %: 45.160 | |
| Atauschii_AET1Gv20393000.67 AET1Gv20393000.67 |
Low | No | 2642 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -29.001 AMFE: -0.693 GC content %: 41.862 | |
| Atauschii_AET1Gv20393000.68 AET1Gv20393000.68 |
Low | No | 1324 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -0.231 Folding energies... MFEI: -29.592 AMFE: -0.661 GC content %: 44.789 | |
| Atauschii_AET1Gv20393000.69 AET1Gv20393000.69 |
Low | No | 2296 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -28.245 AMFE: -0.627 GC content %: 45.078 | |
| Atauschii_AET1Gv20393000.70 AET1Gv20393000.70 |
Low | No | 752 | OG0000034 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -25.891 AMFE: -0.592 GC content %: 43.750 | |
| Atauschii_AET1Gv20393000.9 AET1Gv20393000.9 |
High | No | 787 | OG0009722 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -27.078 AMFE: -0.650 GC content %: 41.677 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20393000.26 | SwissProt | 2021-04-01 | Q8LPJ1 | 1.46e-12 |
| Atauschii_AET1Gv20393000.42 | SwissProt | 2021-04-01 | Q6K9N1 | 5.96e-11 |
| Atauschii_AET1Gv20393000.58 | SwissProt | 2021-04-01 | Q8LPJ1 | 1.29e-12 |
| Atauschii_AET1Gv20393000.21 | SwissProt | 2021-04-01 | Q8LPJ1 | 1.51e-12 |
| Atauschii_AET1Gv20393000.37 | SwissProt | 2021-04-01 | Q0DA21 | 5.21e-17 |
| Atauschii_AET1Gv20393000.53 | SwissProt | 2021-04-01 | Q8LPJ1 | 1.42e-12 |
| Atauschii_AET1Gv20393000.32 | SwissProt | 2021-04-01 | Q8LPJ1 | 1.41e-12 |
| Atauschii_AET1Gv20393000.48 | SwissProt | 2021-04-01 | P42158 | 2.07e-13 |
| Atauschii_AET1Gv20393000.67 | SwissProt | 2021-04-01 | Q0DA21 | 2.1e-10 |
| Atauschii_AET1Gv20393000.27 | SwissProt | 2021-04-01 | Q6K9N1 | 2.12e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
