Atauschii AET1Gv20396400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20396400 [ AET1Gv20396400] |
1D | 215638935 | 215641939 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20396400.10 AET1Gv20396400.10 |
Low | No | 1136 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -30.986 AMFE: -0.623 GC content %: 49.736 | |
| Atauschii_AET1Gv20396400.11 AET1Gv20396400.11 |
Low | No | 915 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.252 Folding energies... MFEI: -30.142 AMFE: -0.663 GC content %: 45.464 | |
| Atauschii_AET1Gv20396400.12 AET1Gv20396400.12 |
Low | No | 829 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.185 Folding energies... MFEI: -31.339 AMFE: -0.666 GC content %: 47.045 | |
| Atauschii_AET1Gv20396400.13 AET1Gv20396400.13 |
Low | No | 994 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.130 Folding energies... MFEI: -29.577 AMFE: -0.659 GC content %: 44.869 | |
| Atauschii_AET1Gv20396400.14 AET1Gv20396400.14 |
Low | No | 942 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.234 Folding energies... MFEI: -26.709 AMFE: -0.652 GC content %: 40.977 | |
| Atauschii_AET1Gv20396400.15 AET1Gv20396400.15 |
Low | No | 856 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -27.769 AMFE: -0.660 GC content %: 42.056 | |
| Atauschii_AET1Gv20396400.16 AET1Gv20396400.16 |
Low | No | 1065 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.246 Folding energies... MFEI: -26.836 AMFE: -0.647 GC content %: 41.502 | |
| Atauschii_AET1Gv20396400.17 AET1Gv20396400.17 |
Low | No | 835 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.084 Folding energies... MFEI: -26.802 AMFE: -0.632 GC content %: 42.395 | |
| Atauschii_AET1Gv20396400.18 AET1Gv20396400.18 |
Low | No | 234 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.472 Folding energies... MFEI: -25.983 AMFE: -0.585 GC content %: 44.444 | |
| Atauschii_AET1Gv20396400.19 AET1Gv20396400.19 |
Low | No | 377 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -29.390 AMFE: -0.586 GC content %: 50.133 | |
| Atauschii_AET1Gv20396400.2 AET1Gv20396400.2 |
Low | No | 1224 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -30.417 AMFE: -0.619 GC content %: 49.101 | |
| Atauschii_AET1Gv20396400.3 AET1Gv20396400.3 |
Low | No | 1394 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.249 Folding energies... MFEI: -34.347 AMFE: -0.624 GC content %: 55.022 | |
| Atauschii_AET1Gv20396400.4 AET1Gv20396400.4 |
Low | No | 1342 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.170 Folding energies... MFEI: -30.373 AMFE: -0.623 GC content %: 48.733 | |
| Atauschii_AET1Gv20396400.5 AET1Gv20396400.5 |
Low | No | 1054 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -32.467 AMFE: -0.631 GC content %: 51.423 | |
| Atauschii_AET1Gv20396400.6 AET1Gv20396400.6 |
Low | No | 1434 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.294 Folding energies... MFEI: -33.703 AMFE: -0.627 GC content %: 53.766 | |
| Atauschii_AET1Gv20396400.7 AET1Gv20396400.7 |
Low | No | 1557 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.305 Folding energies... MFEI: -33.243 AMFE: -0.626 GC content %: 53.115 | |
| Atauschii_AET1Gv20396400.8 AET1Gv20396400.8 |
Low | No | 1679 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.193 Folding energies... MFEI: -32.692 AMFE: -0.627 GC content %: 52.174 | |
| Atauschii_AET1Gv20396400.9 AET1Gv20396400.9 |
Low | No | 1259 | OG0000553 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -30.866 AMFE: -0.626 GC content %: 49.325 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20396400.4 | SwissProt | 2021-04-01 | Q8VZZ4 | 1.22e-20 |
| Atauschii_AET1Gv20396400.17 | SwissProt | 2021-04-01 | Q8VZZ4 | 4.65e-22 |
| Atauschii_AET1Gv20396400.12 | SwissProt | 2021-04-01 | Q8VZZ4 | 4.19e-21 |
| Atauschii_AET1Gv20396400.5 | SwissProt | 2021-04-01 | Q8VZZ4 | 4.77e-21 |
| Atauschii_AET1Gv20396400.18 | SwissProt | 2021-04-01 | Q8VZZ4 | 2.88e-16 |
| Atauschii_AET1Gv20396400.13 | SwissProt | 2021-04-01 | Q8VZZ4 | 8.16e-21 |
| Atauschii_AET1Gv20396400.6 | SwissProt | 2021-04-01 | Q8VZZ4 | 5.77e-21 |
| Atauschii_AET1Gv20396400.19 | SwissProt | 2021-04-01 | Q8VZZ4 | 2.04e-22 |
| Atauschii_AET1Gv20396400.14 | SwissProt | 2021-04-01 | Q8VZZ4 | 1.89e-22 |
| Atauschii_AET1Gv20396400.7 | SwissProt | 2021-04-01 | Q8VZZ4 | 6.42e-21 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
