Atauschii AET1Gv20399100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20399100 [ AET1Gv20399100] |
1D | 217685614 | 217689383 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20399100.10 AET1Gv20399100.10 |
Low | No | 1021 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -34.143 AMFE: -0.611 GC content %: 55.926 | |
| Atauschii_AET1Gv20399100.11 AET1Gv20399100.11 |
Low | No | 2126 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.043 Folding energies... MFEI: -30.851 AMFE: -0.670 GC content %: 46.049 | |
| Atauschii_AET1Gv20399100.13 AET1Gv20399100.13 |
Low | No | 2454 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -29.690 AMFE: -0.664 GC content %: 44.703 | |
| Atauschii_AET1Gv20399100.18 AET1Gv20399100.18 |
Low | No | 1570 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -30.873 AMFE: -0.647 GC content %: 47.707 | |
| Atauschii_AET1Gv20399100.19 AET1Gv20399100.19 |
Low | No | 1679 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -26.462 AMFE: -0.674 GC content %: 39.250 | |
| Atauschii_AET1Gv20399100.20 AET1Gv20399100.20 |
Low | No | 2801 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.168 Folding energies... MFEI: -26.683 AMFE: -0.695 GC content %: 38.379 | |
| Atauschii_AET1Gv20399100.21 AET1Gv20399100.21 |
Low | No | 2257 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.159 Folding energies... MFEI: -27.319 AMFE: -0.692 GC content %: 39.477 | |
| Atauschii_AET1Gv20399100.3 AET1Gv20399100.3 |
High | No | 533 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -34.334 AMFE: -0.561 GC content %: 61.163 | |
| Atauschii_AET1Gv20399100.4 AET1Gv20399100.4 |
Low | No | 1964 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -29.532 AMFE: -0.649 GC content %: 45.519 | |
| Atauschii_AET1Gv20399100.5 AET1Gv20399100.5 |
High | No | 521 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -32.150 AMFE: -0.520 GC content %: 61.804 | |
| Atauschii_AET1Gv20399100.6 AET1Gv20399100.6 |
Low | No | 2495 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.054 Folding energies... MFEI: -29.515 AMFE: -0.663 GC content %: 44.529 | |
| Atauschii_AET1Gv20399100.7 AET1Gv20399100.7 |
Low | No | 2046 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -29.814 AMFE: -0.657 GC content %: 45.357 | |
| Atauschii_AET1Gv20399100.8 AET1Gv20399100.8 |
Low | No | 2637 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.586 AMFE: -0.669 GC content %: 42.738 | |
| Atauschii_AET1Gv20399100.9 AET1Gv20399100.9 |
Low | No | 1916 | OG0000979 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -30.929 AMFE: -0.653 GC content %: 47.390 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20399100.4 | SwissProt | 2021-04-01 | Q0WRY5 | 1.11e-10 |
| Atauschii_AET1Gv20399100.13 | SwissProt | 2021-04-01 | Q9LDZ5 | 1.96e-18 |
| Atauschii_AET1Gv20399100.6 | SwissProt | 2021-04-01 | Q9LDZ5 | 2.01e-18 |
| Atauschii_AET1Gv20399100.18 | SwissProt | 2021-04-01 | Q0WRY5 | 7.67e-11 |
| Atauschii_AET1Gv20399100.7 | SwissProt | 2021-04-01 | Q9LDZ5 | 2.26e-10 |
| Atauschii_AET1Gv20399100.19 | SwissProt | 2021-04-01 | Q0WRY5 | 7.14e-11 |
| Atauschii_AET1Gv20399100.8 | SwissProt | 2021-04-01 | Q0WRY5 | 2.57e-10 |
| Atauschii_AET1Gv20399100.20 | SwissProt | 2021-04-01 | Q0WRY5 | 2.68e-18 |
| Atauschii_AET1Gv20399100.10 | SwissProt | 2021-04-01 | Q0WRY5 | 8.63e-11 |
| Atauschii_AET1Gv20399100.9 | SwissProt | 2021-04-01 | Q9LDZ5 | 1.32e-18 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
