Atauschii AET1Gv20401100
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20401100 [ AET1Gv20401100] |
1D | 218208185 | 218233118 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20401100.35 AET1Gv20401100.35 |
Low | No | 1097 | OG0015854 | Get ORF Coding potential... Type: noncoding Potential: -0.061 Folding energies... MFEI: -27.985 AMFE: -0.646 GC content %: 43.300 | |
| Atauschii_AET1Gv20401100.36 AET1Gv20401100.36 |
Low | No | 1100 | OG0015854 | Get ORF Coding potential... Type: noncoding Potential: -0.020 Folding energies... MFEI: -28.173 AMFE: -0.650 GC content %: 43.364 | |
| Atauschii_AET1Gv20401100.45 AET1Gv20401100.45 |
High | No | 713 | OG0015854 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -30.266 AMFE: -0.698 GC content %: 43.338 | |
| Atauschii_AET1Gv20401100.48 AET1Gv20401100.48 |
Low | No | 407 | OG0068309 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -22.899 AMFE: -0.594 GC content %: 38.575 | |
| Atauschii_AET1Gv20401100.52 AET1Gv20401100.52 |
Low | No | 980 | OG0015855 | Get ORF Coding potential... Type: noncoding Potential: -0.701 Folding energies... MFEI: -30.112 AMFE: -0.653 GC content %: 46.122 | |
| Atauschii_AET1Gv20401100.53 AET1Gv20401100.53 |
Low | No | 786 | OG0015855 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -28.664 AMFE: -0.622 GC content %: 46.056 | |
| Atauschii_AET1Gv20401100.54 AET1Gv20401100.54 |
High | No | 879 | OG0015855 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -29.647 AMFE: -0.631 GC content %: 46.985 | |
| Atauschii_AET1Gv20401100.6 AET1Gv20401100.6 |
High | No | 267 | OG0068310 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -35.356 AMFE: -0.530 GC content %: 66.667 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20401100.48 | SwissProt | 2021-04-01 | Q9ESJ0 | 5.06e-10 |
| Atauschii_AET1Gv20401100.52 | SwissProt | 2021-04-01 | Q499Y0 | 1.61e-4 |
| Atauschii_AET1Gv20401100.53 | SwissProt | 2021-04-01 | Q499Y0 | 3.06e-4 |
| Atauschii_AET1Gv20401100.35 | SwissProt | 2021-04-01 | Q9ESJ0 | 3.0e-10 |
| Atauschii_AET1Gv20401100.36 | SwissProt | 2021-04-01 | Q9ESJ0 | 5.57e-11 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
