Atauschii AET1Gv20402700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20402700 [ AET1Gv20402700] |
1D | 219869199 | 219874833 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20402700.1 AET1Gv20402700.1 |
High | No | 713 | OG0024311 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -26.367 AMFE: -0.608 GC content %: 43.338 | |
| Atauschii_AET1Gv20402700.11 AET1Gv20402700.11 |
High | No | 712 | OG0068315 | Get ORF Coding potential... Type: noncoding Potential: -1.112 Folding energies... MFEI: -24.874 AMFE: -0.632 GC content %: 39.326 | |
| Atauschii_AET1Gv20402700.15 AET1Gv20402700.15 |
High | No | 386 | OG0068316 | Get ORF Coding potential... Type: noncoding Potential: -1.415 Folding energies... MFEI: -21.451 AMFE: -0.552 GC content %: 38.860 | |
| Atauschii_AET1Gv20402700.4 AET1Gv20402700.4 |
High | No | 1235 | OG0024311 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -25.328 AMFE: -0.660 GC content %: 38.381 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
