GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20415000 [ AET1Gv20415000]	1D	228879208	228883482	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20415000.11 AET1Gv20415000.11	High	No	451	OG0068347		Get ORF Coding potential... Type: noncoding Potential: -1.352 Folding energies... MFEI: -29.956 AMFE: -0.689 GC content %: 43.459
Atauschii_AET1Gv20415000.3 AET1Gv20415000.3	High	No	210	OG0068348		Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -39.524 AMFE: -0.634 GC content %: 62.381
Atauschii_AET1Gv20415000.4 AET1Gv20415000.4	High	No	234	OG0068349		Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -30.214 AMFE: -0.509 GC content %: 59.402
Atauschii_AET1Gv20415000.5 AET1Gv20415000.5	High	No	312	OG0068350		Get ORF Coding potential... Type: noncoding Potential: -0.853 Folding energies... MFEI: -28.974 AMFE: -0.646 GC content %: 44.872

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).