Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20420900 [ AET1Gv20420900] |
1D | 232639623 | 232641767 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20420900.1 AET1Gv20420900.1 |
Low | No | 1317 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -29.560 AMFE: -0.612 GC content %: 48.292 | |
Atauschii_AET1Gv20420900.2 AET1Gv20420900.2 |
Low | No | 1092 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -0.175 Folding energies... MFEI: -30.723 AMFE: -0.586 GC content %: 52.473 | |
Atauschii_AET1Gv20420900.3 AET1Gv20420900.3 |
Low | No | 992 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -0.166 Folding energies... MFEI: -31.633 AMFE: -0.582 GC content %: 54.335 | |
Atauschii_AET1Gv20420900.4 AET1Gv20420900.4 |
Low | No | 940 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -0.142 Folding energies... MFEI: -34.287 AMFE: -0.613 GC content %: 55.957 | |
Atauschii_AET1Gv20420900.5 AET1Gv20420900.5 |
Low | No | 576 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -37.222 AMFE: -0.579 GC content %: 64.236 | |
Atauschii_AET1Gv20420900.6 AET1Gv20420900.6 |
Low | No | 983 | OG0004640 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -32.838 AMFE: -0.621 GC content %: 52.899 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20420900.5 | SwissProt | 2021-04-01 | B6SJQ0 | 9.34e-9 |
Atauschii_AET1Gv20420900.6 | SwissProt | 2021-04-01 | B6SJQ0 | 3.31e-8 |
Atauschii_AET1Gv20420900.1 | SwissProt | 2021-04-01 | B6SJQ0 | 6.43e-8 |
Atauschii_AET1Gv20420900.2 | SwissProt | 2021-04-01 | B6SJQ0 | 2.77e-15 |
Atauschii_AET1Gv20420900.3 | SwissProt | 2021-04-01 | B6SJQ0 | 5.39e-15 |
Atauschii_AET1Gv20420900.4 | SwissProt | 2021-04-01 | B6SJQ0 | 2.23e-15 |