Atauschii AET1Gv20434300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20434300 [ AET1Gv20434300] |
1D | 241903934 | 241920216 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20434300.43 AET1Gv20434300.43 |
Low | No | 351 | OG0068402 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -38.462 AMFE: -0.655 GC content %: 58.689 | |
| Atauschii_AET1Gv20434300.45 AET1Gv20434300.45 |
Low | No | 378 | OG0068403 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -26.508 AMFE: -0.557 GC content %: 47.619 | |
| Atauschii_AET1Gv20434300.46 AET1Gv20434300.46 |
Low | No | 306 | OG0068404 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -37.549 AMFE: -0.608 GC content %: 61.765 | |
| Atauschii_AET1Gv20434300.51 AET1Gv20434300.51 |
High | No | 292 | OG0068405 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -34.281 AMFE: -0.572 GC content %: 59.932 | |
| Atauschii_AET1Gv20434300.52 AET1Gv20434300.52 |
Low | No | 300 | OG0015858 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -31.167 AMFE: -0.547 GC content %: 57.000 | |
| Atauschii_AET1Gv20434300.53 AET1Gv20434300.53 |
High | No | 519 | OG0068406 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -23.565 AMFE: -0.597 GC content %: 39.499 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET1Gv20434300.45 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20434300.46 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20434300.52 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET1Gv20434300.43 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
