GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20440700 [ AET1Gv20440700]	1D	245843019	245850540	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20440700.11 AET1Gv20440700.11	High	No	431	OG0068422		Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -25.058 AMFE: -0.587 GC content %: 42.691
Atauschii_AET1Gv20440700.22 AET1Gv20440700.22	Low	No	344	OG0068423		Get ORF Coding potential... Type: noncoding Potential: -0.326 Folding energies... MFEI: -21.512 AMFE: -0.529 GC content %: 40.698

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET1Gv20440700.22	SwissProt	2021-04-01	Q55EX6	1.41e-12

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).