Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20450700 [ AET1Gv20450700] |
1D | 252083376 | 252085816 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20450700.1 AET1Gv20450700.1 |
Low | No | 599 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -27.913 AMFE: -0.518 GC content %: 53.923 | |
Atauschii_AET1Gv20450700.2 AET1Gv20450700.2 |
Low | No | 609 | OG0003656 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -29.836 AMFE: -0.534 GC content %: 55.829 | |
Atauschii_AET1Gv20450700.3 AET1Gv20450700.3 |
Low | No | 345 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -30.145 AMFE: -0.495 GC content %: 60.870 | |
Atauschii_AET1Gv20450700.4 AET1Gv20450700.4 |
Low | No | 275 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -36.982 AMFE: -0.575 GC content %: 64.364 | |
Atauschii_AET1Gv20450700.5 AET1Gv20450700.5 |
Low | No | 343 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.519 Folding energies... MFEI: -33.528 AMFE: -0.523 GC content %: 64.140 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20450700.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20450700.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20450700.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20450700.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20450700.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |