Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20477100 [ AET1Gv20477100] |
1D | 264212869 | 264467787 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20477100.17 AET1Gv20477100.17 |
High | No | 454 | OG0068475 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -24.890 AMFE: -0.549 GC content %: 45.374 | |
Atauschii_AET1Gv20477100.18 AET1Gv20477100.18 |
Low | No | 1967 | OG0009732 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -26.802 AMFE: -0.686 GC content %: 39.095 | |
Atauschii_AET1Gv20477100.22 AET1Gv20477100.22 |
Low | Yes | 2700 | OG0009732 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -28.426 AMFE: -0.761 GC content %: 37.333 | |
Atauschii_AET1Gv20477100.23 AET1Gv20477100.23 |
High | No | 1401 | OG0009732 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -27.623 AMFE: -0.737 GC content %: 37.473 | |
Atauschii_AET1Gv20477100.24 AET1Gv20477100.24 |
High | No | 1873 | OG0009732 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -26.994 AMFE: -0.766 GC content %: 35.238 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20477100.22 | SwissProt | 2021-04-01 | Q42191 | 1.43e-8 |
Atauschii_AET1Gv20477100.22 | Rfam | 14.6 | MIR1122 | 3.4e-11 |
Atauschii_AET1Gv20477100.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20477100.22 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Atauschii_AET1Gv20477100.18 | SwissProt | 2021-04-01 | Q42191 | 1.41e-11 |