Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20477900 [ AET1Gv20477900] |
1D | 264471024 | 264489811 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20477900.12 AET1Gv20477900.12 |
Low | No | 260 | OG0068476 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -39.731 AMFE: -0.638 GC content %: 62.308 | |
Atauschii_AET1Gv20477900.19 AET1Gv20477900.19 |
Low | Yes | 2873 | OG0068477 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -32.708 AMFE: -0.754 GC content %: 43.369 | |
Atauschii_AET1Gv20477900.7 AET1Gv20477900.7 |
High | No | 304 | OG0068478 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -22.829 AMFE: -0.318 GC content %: 71.711 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20477900.12 | SwissProt | 2021-04-01 | Q9SKD3 | 3.69e-13 |
Atauschii_AET1Gv20477900.19 | Rfam | 14.6 | MIR1122 | 1.9e-17 |
Atauschii_AET1Gv20477900.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |