Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20490800 [ AET1Gv20490800] |
1D | 274863627 | 274867642 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20490800.1 AET1Gv20490800.1 |
Low | No | 2240 | OG0015864 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -30.045 AMFE: -0.663 GC content %: 45.312 | |
Atauschii_AET1Gv20490800.2 AET1Gv20490800.2 |
High | No | 655 | OG0015864 | Get ORF Coding potential... Type: noncoding Potential: -1.470 Folding energies... MFEI: -29.206 AMFE: -0.589 GC content %: 49.618 | |
Atauschii_AET1Gv20490800.3 AET1Gv20490800.3 |
Low | No | 2991 | OG0015864 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -26.998 AMFE: -0.657 GC content %: 41.090 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20490800.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
Atauschii_AET1Gv20490800.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy |