Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20509400 [ AET1Gv20509400] |
1D | 289335321 | 289355723 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET1Gv20509400.10 AET1Gv20509400.10 |
High | No | 387 | OG0068523 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -28.760 AMFE: -0.598 GC content %: 48.062 | |
Atauschii_AET1Gv20509400.18 AET1Gv20509400.18 |
Low | Yes | 592 | OG0068524 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -30.270 AMFE: -0.807 GC content %: 37.500 | |
Atauschii_AET1Gv20509400.29 AET1Gv20509400.29 |
High | No | 362 | OG0068525 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -24.448 AMFE: -0.602 GC content %: 40.608 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET1Gv20509400.18 | Rfam | 14.6 | MIR1122 | 1.1e-15 |
Atauschii_AET1Gv20509400.18 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |