GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET1Gv20521300 [ AET1Gv20521300]	1D	298507872	298508565	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET1Gv20521300.1 AET1Gv20521300.1	High	No	584	OG0024341		Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -31.707 AMFE: -0.621 GC content %: 51.027
Atauschii_AET1Gv20521300.2 AET1Gv20521300.2	High	No	605	OG0024341		Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -31.218 AMFE: -0.607 GC content %: 51.405
Atauschii_AET1Gv20521300.3 AET1Gv20521300.3	High	No	692	OG0068548		Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -29.884 AMFE: -0.588 GC content %: 50.867

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).