Atauschii AET1Gv20542000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20542000 [ AET1Gv20542000] |
1D | 308662149 | 308702080 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET1Gv20542000.37 AET1Gv20542000.37 |
High | No | 217 | OG0068592 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -26.267 AMFE: -0.626 GC content %: 41.935 | |
| Atauschii_AET1Gv20542000.53 AET1Gv20542000.53 |
High | No | 322 | OG0068593 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -24.503 AMFE: -0.584 GC content %: 41.925 | |
| Atauschii_AET1Gv20542000.58 AET1Gv20542000.58 |
High | No | 417 | OG0006788 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -32.014 AMFE: -0.654 GC content %: 48.921 | |
| Atauschii_AET1Gv20542000.59 AET1Gv20542000.59 |
High | No | 371 | OG0068594 | Get ORF Coding potential... Type: noncoding Potential: -1.287 Folding energies... MFEI: -25.040 AMFE: -0.615 GC content %: 40.701 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
